| DATE OF BUG REPORT | BUG EXPLANATION | QUERY TYPE | STATUS | FIXED AT |
|---|---|---|---|---|
| Aug. 24, 2023 | It seems like almost all metals in all pdb files now give very poor scores, 6 or lower, even ones that performed much better a week ago. Dear User, Thank you for providing your feedback. In comparing metal ions, an approximate ranking can be established by considering the metal in the position of the current one. This comparison involves three parameters that may vary: Atomic contacts Valence Geometry Each of these parameters contributes a maximum of 2 points, resulting in a total potential score of 6 in the current version. In previous versions, the remaining parameters were remaining constant. E.g. Parameters such as B-factor (env) are not taken into consideration due to the requirement of approximately 3 cycles of refinement for each metal ion to attain accurate results. Such process would demand a significant amount of time. We can implement choosing scooring approach (old/new) in upcoming ~2 weeks. Best regards, Minor Lab | bug | Partially fixed | Aug. 26, 2023 |
| May 24, 2023 | cmm soes not draw distances to sulfurs | bug | Fixed | Aug. 24, 2023 |
| May 20, 2023 | 3wax doe snot work | bug | Not fixed | None |
| April 13, 2023 | fix pymol_select line 94 | bug | Not fixed | None |
| Feb. 7, 2023 | In the pdb 1IHH, the platinum center is correctly assigned having the oxidation state (II) and a square planar geometry. However the geometry field is highlighted in yellow, which I do not understand. See also (4) Kuppuraj G, Dudev M, Lim C (2009) J. Phys. Chem. B, 113, 2952-2960. Thanks for checking! Best regards Bernhard | bug | Fixed | Aug. 22, 2023 |
| Jan. 26, 2023 | Distances when using cif file are not shown | bug | Not fixed | None |
| Nov. 21, 2022 | 8EW4 shows wrong diff map | bug | Not fixed | None |
| Nov. 18, 2022 | Zn square plannar is now in both version as dubious | suggestion | Fixed | Nov. 18, 2022 |
| Nov. 15, 2022 | Install pymol module in django version | bug | Fixed | Nov. 18, 2022 |
| Nov. 4, 2022 | precalculated dirs should be deleted if there is modification to display fresh ones | suggestion | Not implemented | None |